Protein Guru Logo      
Cell Signaling and Omics Software Portal
    




Welcome to ProteinGuru

Latest milestones:

- GECO software is published in Bioinformatics
https://academic.oup.com/bioinformatics/article-abstract/35/1/156/5053321

- CrossCheck software is published in Scientific Reports
https://www.nature.com/articles/s41598-017-05960-3

- OLMAT software receives Innovator of the Year Award 2012 from Dundee University.

 


Latest Citations of Our Software:

- CrossCheck is cited in a PLOS Biology paper by Najafov et al.
https://journals.plos.org/plosbiology/article?id=10.1371/journal.pbio.2005756

- CrossCheck is cited in an Expert Review of Proteomics paper by Briochi and Banfi.
https://www.tandfonline.com/doi/abs/10.1080/14789450.2018.1521275

- GECO is cited in a Frontiers in Genetics paper by Mongia et al.
https://www.frontiersin.org/articles/10.3389/fgene.2019.00009/full

- BASALT is cited in a Science paper by Ben-Sahra et al.
http://science.sciencemag.org/content/351/6274/728/

- MotifGen and BASALT software are cited in a Journal of Cell Biology paper by Xia et al.
http://jcb.rupress.org/content/210/5/705.short

- OLMAT is cited in an EMBO Journal paper by Perez-Oliva et al.
http://emboj.embopress.org/content/early/2014/12/23/embj.201489184

- OLMAT is cited in a Biochemical Journal paper by Banerjee et al.
http://www.biochemj.org/bj/461/bj4610233.htm

- OLMAT is cited in a Nature Communications paper by Herhaus et al.
http://www.nature.com/ncomms/2013/130927/ncomms3519/full/ncomms3519.html

- OLMAT is cited in a Journal of Cell Science paper by Hoxhaj et al.
http://jcs.biologists.org/content/125/19/4662.long



ProteinGuru Software:

GECO - Gene expression correlation analysis tool that performs genetic algorithm-driven deconvolution, cancer cell drug sensitivity comparisons and drug screens.

CrossCheck - High-throughput, proteomics, transcriptomics and genome-wide screen data cross-referencing tool.

GeneTools - NCBI Gene database mining software that retrieves information about reported protein-protein interactions, comoon interactions, gene ontology, and more.

BASALT - Biological Sequence Analysis Tool. A handy tool to analyze protein sequences for (multiple) motifs, using regular expression search.

Motifgen - Generates a consensus motif using input of stacked sequences.

PeptiCut - Finds the optimum protease to be used in MassSpec analysis. Also, can selects proteases that wouldn't cut at the motif of interest.

Densimolar - A simple calculator for conversion of densities to molarities.

Quantilator - Performs everyday handy conversions such as from micrograms per microliters into micromolars and vice versa.

FreqPlot - Frequency plotter tool. Simply enter a list of gene symbols or protein names and see how frequently does each appear in your list.

Timecourse - A simple tool to organize your timecourse experiments.